Planning
| Time |
Event |
(+)
|
|
09:15 - 09:30
|
Welcome (Dussane) |
|
|
09:30 - 11:00
|
neural simulation (Dussane) - Andrew Davison |
(+)
|
| 09:30 - 10:00 |
› What's new with Brian? - Romain Brette, Laboratoire de la Psychologie de la Perception, Département d'Etudes Cognitives |
|
| 10:00 - 10:15 |
› PyNN: a unified interface for neuronal network simulators - Andrew Davison, Unité de Neuroscience, Information et Complexité |
|
| 10:15 - 10:30 |
› Python Tools for Neuromorphic Systems Configuration - Emre Neftci, Institute of Neuroinformatics |
|
| 10:30 - 10:45 |
› CLONES: A Closed-Loop Simulation Framework for Body, Muscles and Neurons - Thomas Voegtlin, Laboratoire Lorrain de Recherche en Informatique et Automatique |
|
| 10:45 - 11:00 |
› DANA - Nicolas P. Rougier, INRIA Nancy Grand Est, Laboratoire Lorrain de Recherche en Informatique et Automatique |
|
|
11:00 - 11:30
|
Coffee break |
|
|
11:30 - 12:30
|
electrophysiology (Dussane) - Romain Brette |
(+)
|
| 11:30 - 11:45 |
› Flexible spike sorting in Python - Bartosz Telenczuk, Institute for Theoretical Biology, Neurology - Belevtsoff Dmytro, Bernstein Center for Computational Neuroscience Berlin, Neurology |
|
| 11:45 - 12:00 |
› NeurOnline: A software to perform online analysis and control of electrophysiological recordings - Ambard Maxime, Bernstein Center Freiburg |
|
| 12:00 - 12:15 |
› Using Python tools for analysis of a mathematical model of after-depolarisation - Jakub Nowacki, Bristol Centre for Applied Nonlinear Mathematics |
|
| 12:15 - 12:30 |
› Optimisation of stimulation patterns for specific questions in electrophysiology experiments: a Python framework - Damien Drix, Centre for Computational Neuroscience and Robotics |
|
|
12:30 - 14:00
|
Lunch |
|
|
14:00 - 15:30
|
neuroimaging data processing (Dussane) - Bertrand Thirion |
(+)
|
| 14:00 - 14:30 |
› The virtues and sins of PyMVPA - Yaroslav O. Halchenko, Dr. James V. Haxby Lab |
|
| 14:30 - 14:45 |
› Classification, Induction and Brain Decoding - Emanuele Olivetti, NeuroInformatics Laboratory - Susanne Greiner, NeuroInformatics Laboratory |
|
| 14:45 - 15:00 |
› BrainVISA: a complete software platform for neuroimaging - Dominique Geffroy, IFR 49 - Yann Cointepas, LNAO, NeuroSpin, CEA |
|
| 15:00 - 15:15 |
› Pyhrf: a package to extract and study hemodynamics from fMRI data - Thomas VINCENT, Laboratoire de Neuro-imagerie Assistée par Ordinateur |
|
|
15:15 - 15:30
|
Coffee break |
|
|
15:30 - 17:00
|
Poster |
(+)
|
| 15:30 - 17:00 |
› 3D Brain Atlas Reconstructor and Common Atlas Format, the infrastructure for constructing tree dimensional brain atlases - Piotr Majka, Departament of Neurophysiology, Nencki Institute of Experimental Biology |
|
| 15:30 - 17:00 |
› A Package for Kernel Smoothing via Diffusion: Rate Estimation of Spike Trains modeled as Non-homogeneous Poisson Processes. - Taskin Deniz, Bernstein Center Freiburg |
|
| 15:30 - 17:00 |
› Developing and evaluating a computerized tool for measuring perceived stress - Dalal Ben Loubir, Medical Informatics Laboratory - Mohamed Bennani Othmani, Medical Informatics Laboratory |
|
| 15:30 - 17:00 |
› Dynamical characterisation of neural networks and neurophysiological time series: Parallel approaches using Python - Thomas Greg Corcoran,, Centre for Computational Neuroscience and Robotics, University of Sussex |
|
| 15:30 - 17:00 |
› Gom2n: A toolchain to simulate and investigate selective stimulation strategies for FES - Laforet Jeremy, Biomecanique et BioIngenierie |
|
| 15:30 - 17:00 |
› Machine learning for fMRI in Python: inverse inference with scikit-learn - Bertrand Thirion, INRIA Saclay-Île-de-France |
|
| 15:30 - 17:00 |
› Random Subspace Methods for Neuroimaging - Diego Sona, NeuroInformatics Laboratory - Paolo Avesani, NeuroInformatics Laboratory |
|
| 15:30 - 17:00 |
› Simulating topographic distributions of event-related potentials using Brisk - Roman Goj, Psychological Imaging Laboratory |
|
| 15:30 - 17:00 |
› Waxholm Space - Raphael Ritz, Secretariat |
|
| Time |
Event |
(+)
|
|
09:30 - 11:15
|
workflows and pipelines for data processing (Dussane) - Romain Brette |
(+)
|
| 09:30 - 10:15 |
› NiPyPE: A flexible, lightweight and extensible neuroimaging data processing framework - Satrajit Ghosh, Massachusetts Institute of Technology |
|
| 10:15 - 10:30 |
› Nitime and IPython: tools for time-series analysis and high-level parallel computing - Fernando Perez, Henry H. Wheeler Brain Imaging Center, University of California, Berkeley |
|
| 10:30 - 10:45 |
› More than batteries included: NeuroDebian - Michael Hanke, Department of Experimental Psychology, University of Magdeburg, Center for Cognitive Neuroscience, Dartmouth College, Department of Psychological and Brain Sciences, Dartmouth College |
|
| 10:45 - 11:00 |
› Interoperability among Data Processing Frameworks: Reality or Wishful Thinking? - Tiziano Zito, Bernstein Center for Computational Neuroscience Berlin, Berlin Institute of Technology |
|
| 11:00 - 11:15 |
› Soma-workflow: An unified and simple interface to parallel computing resources - Soizic Laguitton, LNAO, NeuroSpin, CEA |
|
|
11:15 - 11:45
|
Coffee break |
|
|
11:45 - 12:30
|
data management and databasing (Dussane) - Andrew Davison |
(+)
|
| 11:45 - 12:00 |
› Neo: representing and manipulating electrophysiology data in Python - Andrew Davison, Unité de Neuroscience, Information et Complexité |
|
| 12:00 - 12:15 |
› NiBabel: Conductor for a cacophony of neuro-imaging file formats - Michael Hanke, Department of Psychological and Brain Sciences, Dartmouth College, Center for Cognitive Neuroscience, Dartmouth College, Department of Experimental Psychology, University of Magdeburg |
|
| 12:15 - 12:30 |
› Lessons learned from neuroimaging tool development in Python - Stephan Gerhard, EPFL Signal Processing Lab 5 |
|
|
12:30 - 13:45
|
Lunch |
|
|
13:45 - 14:30
|
IPython tools for time-series analysis and high-level parallel computing - Fernando Perez |
|
|
14:30 - 15:15
|
visualization tools (Dussane) - Gaël Varoquaux |
(+)
|
| 14:30 - 15:00 |
› Anatomist: a python framework for interactive 3D visualization of neuroimaging data - Yann Cointepas, LNAO, NeuroSpin, CEA |
|
| 15:00 - 15:15 |
› 3D Brain Atlas Reconstructor and Common Atlas Format, the infrastructure for constructing tree dimensional brain atlases - Piotr Majka, Departament of Neurophysiology, Nencki Institute of Experimental Biology |
|
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